pyPhase

• pyPhase package
  • dataset module
    • Backend
    • Dataset
      • Dataset.Lambda
      • Dataset.align_projection()
      • Dataset.align_projections()
      • Dataset.get_alignment()
      • Dataset.nfx
      • Dataset.nfy
    • EDF
      • EDF.backend_initialized
      • EDF.get_image()
      • EDF.initialize_backend()
      • EDF.read_parameters_backend()
      • EDF.write_image()
    • ESRF
      • ESRF.GetSinogram()
      • ESRF.align()
      • ESRF.align_projection()
      • ESRF.calculate_axis_position()
      • ESRF.calculate_axis_positions()
      • ESRF.calculate_motion()
      • ESRF.calculate_reference_position()
      • ESRF.display_alignment()
      • ESRF.fit_alignment()
      • ESRF.get_alignment()
      • ESRF.get_image()
      • ESRF.get_motion()
      • ESRF.get_projection()
      • ESRF.nfx
      • ESRF.nfy
      • ESRF.populate()
      • ESRF.preprocess()
      • ESRF.write_image()
    • ESRF_dev
      • ESRF_dev.get_projection()
      • ESRF_dev.read_parameters_frontend()
    • Elettra
      • Elettra.get_projection()
      • Elettra.read_parameters_frontend()
    • HDF5
      • HDF5.backend_initialized
      • HDF5.get_image()
      • HDF5.initialize_backend()
      • HDF5.preprocessing_initialised
      • HDF5.read_parameters_backend()
      • HDF5.write_dark()
      • HDF5.write_flat()
      • HDF5.write_image()
    • ID16B
    • ID19
      • ID19.read_parameters_frontend()
    • Nanomax
      • Nanomax.get_projection()
      • Nanomax.read_parameters_frontend()
    • NanomaxPreprocessed
      • NanomaxPreprocessed.read_parameters_frontend()
    • NanomaxPreprocessed2D
      • NanomaxPreprocessed2D.get_projection()
      • NanomaxPreprocessed2D.read_parameters_frontend()
    • NanomaxPreprocessedTomo
      • NanomaxPreprocessedTomo.get_projection()
      • NanomaxPreprocessedTomo.read_parameters_frontend()
    • get_backend()
  • parallelizer module
    • OAR
      • OAR.Launch()
      • OAR.WriteOarFiles()
    • SLURM()
    • Serial()
  • phaseretrieval module
    • ADMM_CTF
      • ADMM_CTF.inv_block_toeplitz_ctf_betaoverdelta()
      • ADMM_CTF.operator_ctf_adjoint()
    • CTF
      • CTF.create_multimaterial_prior()
    • CTFHOM
      • CTFHOM.delta_beta
    • CTFPurePhase
    • GDTV
    • GradientDescent
      • GradientDescent.alpha
      • GradientDescent.retriever
    • HIO_ER
      • HIO_ER.error_reduction()
      • HIO_ER.hybrid_input_output()
      • HIO_ER.reconstruct_projection()
      • HIO_ER.retriever
    • HPR
      • HPR.hybrid_projection_reflection()
      • HPR.reconstruct_projection()
      • HPR.retriever
    • IRGN
      • IRGN.Frechet_derivative()
      • IRGN.adjoint_Frechet_derivative()
      • IRGN.operator_to_inverse()
    • Mixed
      • Mixed.Lcurve()
      • Mixed.display_Lcurve()
      • Mixed.get_prior()
    • NLCG
      • NLCG.alpha
      • NLCG.retriever
    • NLPDHGM
      • NLPDHGM.reconstruct_projection()
    • PDHGM_CTF
    • PhaseRetrievalAlgorithm2D
      • PhaseRetrievalAlgorithm2D.Alpha
      • PhaseRetrievalAlgorithm2D.Fresnel_number
      • PhaseRetrievalAlgorithm2D.Lambda
      • PhaseRetrievalAlgorithm2D.frequency_variable()
      • PhaseRetrievalAlgorithm2D.nfx
      • PhaseRetrievalAlgorithm2D.nfy
      • PhaseRetrievalAlgorithm2D.reconstruct_image()
      • PhaseRetrievalAlgorithm2D.reconstruct_projection()
      • PhaseRetrievalAlgorithm2D.reconstruct_projections()
      • PhaseRetrievalAlgorithm2D.simple_propagator()
    • RAAR
      • RAAR.reconstruct_projection()
      • RAAR.relaxed_averaged_alternating_reflections()
      • RAAR.retriever
    • TIEHOM
      • TIEHOM.delta_beta
  • propagator module
    • CTF
      • CTF.PropagateProjection()
    • Fresnel
    • Propagator
      • Propagator.propagate_image()
      • Propagator.propagate_projection()
  • tomography module
    • PyHST
      • PyHST.ForwardProject()
      • PyHST.reconstruct()
    • Tomography
  • utilities module
    • ElastixAffine
    • ElastixRigid
    • ElastixSimilar
    • ImageDisplayer
    • PyplotImageDisplayer
      • PyplotImageDisplayer.close_all()
      • PyplotImageDisplayer.display()
      • PyplotImageDisplayer.display_stack()
    • RegistrationAlgorithm
      • RegistrationAlgorithm.apply_transformation()
      • RegistrationAlgorithm.register()
    • StackViewer
    • resize()
    • update()
  • operators module
    • adjoint_frechet_derivative()
    • amplitude_constraint()
    • div()
    • error_estimate()
    • forward()
    • frechet_derivative()
    • grad()
    • shrinkage()