pyPhase
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A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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R
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S
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T
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U
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W
A
adjoint_Frechet_derivative() (phaseretrieval.GaussNewton method)
(phaseretrieval.GDTV method)
(phaseretrieval.NLPDHGM method)
ADMM_CTFhomo (class in phaseretrieval)
align() (dataset.ESRF method)
align_projection() (dataset.Dataset method)
(dataset.ESRF method)
align_projections() (dataset.Dataset method)
alpha() (phaseretrieval.GradientDescent property)
(phaseretrieval.HIO_ER property)
(phaseretrieval.HPR property)
(phaseretrieval.NLCG property)
Alpha() (phaseretrieval.PhaseRetrievalAlgorithm2D property)
alpha() (phaseretrieval.RAAR property)
amplitude_constraint() (phaseretrieval.HIO_ER method)
(phaseretrieval.HPR method)
(phaseretrieval.RAAR method)
apply_transformation() (utilities.RegistrationAlgorithm method)
B
Backend (class in dataset)
backend (in module dataset)
backend_initialized() (dataset.EDF property)
(dataset.HDF5 property)
C
calculate_axis_position() (dataset.ESRF method)
calculate_axis_positions() (dataset.ESRF method)
calculate_motion() (dataset.ESRF method)
calculate_reference_position() (dataset.ESRF method)
close_all() (utilities.PyplotImageDisplayer method)
create_multimaterial_prior() (phaseretrieval.Mixed method)
CTF (class in phaseretrieval)
(class in propagator)
CTFHOM (class in phaseretrieval)
CTFPurePhase (class in phaseretrieval)
D
dataset
module
Dataset (class in dataset)
delta_beta() (phaseretrieval.TIEHOM property)
display() (utilities.PyplotImageDisplayer method)
display_alignment() (dataset.ESRF method)
display_Lcurve() (phaseretrieval.Mixed method)
display_stack() (utilities.PyplotImageDisplayer method)
div() (phaseretrieval.GDTV method)
(phaseretrieval.NLPDHGM method)
(phaseretrieval.PDHGM_CTF method)
E
EDF (class in dataset)
ElastixAffine (class in utilities)
ElastixRigid (class in utilities)
ElastixSimilar (class in utilities)
Elettra (class in dataset)
error_estimate() (phaseretrieval.HIO_ER method)
(phaseretrieval.HPR method)
(phaseretrieval.RAAR method)
error_reduction() (phaseretrieval.HIO_ER method)
ESRF (class in dataset)
ESRF_dev (class in dataset)
F
fit_alignment() (dataset.ESRF method)
ForwardProject() (tomography.PyHST method)
Frechet_derivative() (phaseretrieval.GaussNewton method)
(phaseretrieval.NLPDHGM method)
frequency_variable() (phaseretrieval.PhaseRetrievalAlgorithm2D method)
Fresnel (class in propagator)
Fresnel_number() (phaseretrieval.PhaseRetrievalAlgorithm2D property)
G
GaussNewton (class in phaseretrieval)
GDTV (class in phaseretrieval)
get_alignment() (dataset.Dataset method)
(dataset.ESRF method)
get_image() (dataset.EDF method)
(dataset.ESRF method)
(dataset.HDF5 method)
get_motion() (dataset.ESRF method)
get_prior() (phaseretrieval.Mixed method)
get_projection() (dataset.Elettra method)
(dataset.ESRF method)
(dataset.ESRF_dev method)
(dataset.Nanomax method)
(dataset.NanomaxPreprocessed2D method)
(dataset.NanomaxPreprocessedTomo method)
GetSinogram() (dataset.ESRF method)
grad() (phaseretrieval.ADMM_CTFhomo method)
(phaseretrieval.GDTV method)
(phaseretrieval.NLPDHGM method)
(phaseretrieval.PDHGM_CTF method)
grad_adj() (phaseretrieval.ADMM_CTFhomo method)
GradientDescent (class in phaseretrieval)
H
HDF5 (class in dataset)
HIO_ER (class in phaseretrieval)
HPR (class in phaseretrieval)
hybrid_input_output() (phaseretrieval.HIO_ER method)
hybrid_projection_reflection() (phaseretrieval.HPR method)
I
ID16B (class in dataset)
ID19 (class in dataset)
ImageDisplayer (class in utilities)
initialize_backend() (dataset.EDF method)
(dataset.HDF5 method)
inv_block_toeplitz_ctf_betaoverdelta() (phaseretrieval.ADMM_CTFhomo method)
L
Lambda() (dataset.Dataset property)
(phaseretrieval.PhaseRetrievalAlgorithm2D property)
Launch() (parallelizer.OAR method)
Lcurve() (phaseretrieval.Mixed method)
M
Mixed (class in phaseretrieval)
module
dataset
parallelizer
phaseretrieval
propagator
pyphase
tomography
utilities
N
Nanomax (class in dataset)
NanomaxPreprocessed (class in dataset)
NanomaxPreprocessed2D (class in dataset)
NanomaxPreprocessedTomo (class in dataset)
nfx() (dataset.Dataset property)
(dataset.ESRF property)
(phaseretrieval.PhaseRetrievalAlgorithm2D property)
nfy() (dataset.Dataset property)
(dataset.ESRF property)
(phaseretrieval.PhaseRetrievalAlgorithm2D property)
NLCG (class in phaseretrieval)
NLPDHGM (class in phaseretrieval)
O
OAR (class in parallelizer)
operator_ctf_adjoint() (phaseretrieval.ADMM_CTFhomo method)
operator_to_inverse() (phaseretrieval.GaussNewton method)
P
parallelizer
module
PDHGM_CTF (class in phaseretrieval)
phaseretrieval
module
PhaseRetrievalAlgorithm2D (class in phaseretrieval)
populate() (dataset.ESRF method)
preprocess() (dataset.ESRF method)
preprocessing_initialised() (dataset.HDF5 property)
propagate_image() (propagator.Propagator method)
propagate_projection() (propagator.Propagator method)
PropagateProjection() (propagator.CTF method)
propagator
module
Propagator (class in propagator)
PyHST (class in tomography)
pyphase
module
PyplotImageDisplayer (class in utilities)
R
RAAR (class in phaseretrieval)
read_parameters_backend() (dataset.EDF method)
(dataset.HDF5 method)
read_parameters_frontend() (dataset.Elettra method)
(dataset.ESRF_dev method)
(dataset.ID19 method)
(dataset.Nanomax method)
(dataset.NanomaxPreprocessed method)
(dataset.NanomaxPreprocessed2D method)
(dataset.NanomaxPreprocessedTomo method)
reconstruct() (tomography.PyHST method)
reconstruct_image() (phaseretrieval.PhaseRetrievalAlgorithm2D method)
reconstruct_projection() (phaseretrieval.HIO_ER method)
(phaseretrieval.HPR method)
(phaseretrieval.PhaseRetrievalAlgorithm2D method)
(phaseretrieval.RAAR method)
reconstruct_projections() (phaseretrieval.PhaseRetrievalAlgorithm2D method)
register() (utilities.RegistrationAlgorithm method)
RegistrationAlgorithm (class in utilities)
relaxed_averaged_alternating_reflections() (phaseretrieval.RAAR method)
resize() (in module utilities)
retriever() (phaseretrieval.GradientDescent property)
(phaseretrieval.HIO_ER property)
(phaseretrieval.HPR property)
(phaseretrieval.NLCG property)
(phaseretrieval.RAAR property)
S
Serial() (in module parallelizer)
shrinkage() (phaseretrieval.ADMM_CTFhomo method)
simple_propagator() (phaseretrieval.PhaseRetrievalAlgorithm2D method)
SLURM() (in module parallelizer)
StackViewer (class in utilities)
T
TIEHOM (class in phaseretrieval)
tomography
module
Tomography (class in tomography)
U
update() (in module utilities)
utilities
module
W
write_dark() (dataset.HDF5 method)
write_flat() (dataset.HDF5 method)
write_image() (dataset.EDF method)
(dataset.ESRF method)
(dataset.HDF5 method)
WriteOarFiles() (parallelizer.OAR method)
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